chemaxon.marvin.applet

Class JMSketch

java.lang.Object

java.awt.Component

java.awt.Container

java.awt.Panel

java.applet.Applet

javax.swing.JApplet

chemaxon.marvin.applet.AbstractMarvinApplet

chemaxon.marvin.applet.JMSketch

All Implemented Interfaces:

chemaxon.marvin.applet.JMSketchIface, chemaxon.marvin.applet.MAppletIface, MouseListener, ImageObserver, MenuContainer, PropertyChangeListener, Serializable, EventListener, Accessible, RootPaneContainer

public class JMSketch
extends AbstractMarvinApplet
implements chemaxon.marvin.applet.JMSketchIface

Swing version of the MarvinSketch Applet.

Since:

Marvin 2.0

Version:

5.3, 11/08/2009

Author:

Peter Csizmadia, Nora Mate, Zsolt Mohacsi, Istvan Fajth, Tamas Vertse

See Also:

Serialized Form

Nested Class Summary

Nested classes/interfaces inherited from class javax.swing.JApplet

JApplet.AccessibleJApplet

Nested classes/interfaces inherited from class java.applet.Applet

Applet.AccessibleApplet

Nested classes/interfaces inherited from class java.awt.Panel

Panel.AccessibleAWTPanel

Nested classes/interfaces inherited from class java.awt.Container

Container.AccessibleAWTContainer

Nested classes/interfaces inherited from class java.awt.Component

Component.AccessibleAWTComponent, Component.BaselineResizeBehavior, Component.BltBufferStrategy, Component.FlipBufferStrategy

Field Summary

Fields inherited from class chemaxon.marvin.applet.AbstractMarvinApplet

debug, panel

Fields inherited from class javax.swing.JApplet

accessibleContext, rootPane, rootPaneCheckingEnabled

Fields inherited from class java.awt.Component

BOTTOM_ALIGNMENT, CENTER_ALIGNMENT, LEFT_ALIGNMENT, RIGHT_ALIGNMENT, TOP_ALIGNMENT

Fields inherited from interface java.awt.image.ImageObserver

ABORT, ALLBITS, ERROR, FRAMEBITS, HEIGHT, PROPERTIES, SOMEBITS, WIDTH

Constructor Summary

Constructors

Constructor and Description
JMSketch()

Method Summary

Methods

Modifier and Type	Method and Description
void	clean2D()
void	clean3D()
protected void	createGUI()
String	evaluateChemicalTerms(String expression)
protected String	evaluateChemicalTerms0(String expression, chemaxon.struc.Molecule mol)
String	getAtomAlias(int i)
int	getAtomCharge(int atomNum) Gets the charge of the specified atom, from the molecule currently used.
int	getAtomCount()
String	getAtomExtraLabel(int i)
int	getAtomRadicalState(int atomNum) Gets the radical state of the specified atom, from the molecule currently used.
String	getAtomSymbol(int atomNum) Gets the atom symbol of the specified atom, from the molecule currently used.
int	getAtomValenceProperty(int atomNum) Gets the valence property of the specified atom, from the molecule currently used.
boolean	getAutoScale()
int	getDisconnectedFragmentsCount()
protected chemaxon.struc.MDocument	getDocInPanel()
String	getImageShowURL()
String	getMol(String fmt)
double	getMolExactMass()
String	getMolFormula()
String[]	getMolFrags(String fmt)
String	getMolImage(String fmt)
protected chemaxon.struc.Molecule	getMolInPanel()
double	getMolMass()
String	getMolProperty(String key)
int	getMolPropertyCount()
String	getMolPropertyKey(int i)
protected chemaxon.marvin.sketch.swing.SketchPanel	getPanel()
String	getPiece(String fmt)
double	getScale()
String	getSelectedMol(String fmt)
boolean	hasValenceError()
boolean	isAtomSelected(int i)
boolean	isEmpty()
void	mouseReleased(MouseEvent ev) Handles the viewer button press events.
void	postImage(String fmt, String where)
void	redo()
void	selectAllAtoms(boolean v)
void	selectAtom(int atom, boolean v)
void	setAbsoluteStereoFlag(boolean stereoFlag)
void	setAbsoluteStereoFlag0(Boolean stereoFlag)
void	setAtomAlias(int i, String alias)
void	setAtomCharge(int atomNum, int chg) Sets the charge of the specified atom, from the molecule currently used.
void	setAtomExtraLabel(int i, String label)
void	setAtomRadicalState(int atomNum, int radState) Sets the radical state of the specified atom, from the molecule currently used.
void	setAtomValenceProperty(int atomNum, int value) Sets the valence property of the specified atom, from the molecule currently used.
void	setAutoScale(boolean as)
void	setMol(String s)
void	setMol(String s, String opts)
void	setMolProperty(String key, String value)
void	setPiece(String s)
void	setScale(double m)
void	start() Starts the applet.
void	undo()

Methods inherited from class chemaxon.marvin.applet.AbstractMarvinApplet

destroy, enqueueForPrivilegedProcessing, getAppletInBrowser, getAppletInfo, getCodeBase, getParameter, getSettingsForApplet, init, isChemicalTermsExpressionSyntaxError, mouseClicked, mouseEntered, mouseExited, mousePressed, propertyChange, setPanel, setParentApplet, stop, validateMoleculeStr, validateMoleculeStr

Methods inherited from class javax.swing.JApplet

addImpl, createRootPane, getAccessibleContext, getContentPane, getGlassPane, getGraphics, getJMenuBar, getLayeredPane, getRootPane, getTransferHandler, isRootPaneCheckingEnabled, paramString, remove, repaint, setContentPane, setGlassPane, setJMenuBar, setLayeredPane, setLayout, setRootPane, setRootPaneCheckingEnabled, setTransferHandler, update

Methods inherited from class java.applet.Applet

getAppletContext, getAudioClip, getAudioClip, getDocumentBase, getImage, getImage, getLocale, getParameterInfo, isActive, isValidateRoot, newAudioClip, play, play, resize, resize, setStub, showStatus

Methods inherited from class java.awt.Panel

addNotify

Methods inherited from class java.awt.Container

add, add, add, add, add, addContainerListener, addPropertyChangeListener, addPropertyChangeListener, applyComponentOrientation, areFocusTraversalKeysSet, countComponents, deliverEvent, doLayout, findComponentAt, findComponentAt, getAlignmentX, getAlignmentY, getComponent, getComponentAt, getComponentAt, getComponentCount, getComponents, getComponentZOrder, getContainerListeners, getFocusTraversalKeys, getFocusTraversalPolicy, getInsets, getLayout, getListeners, getMaximumSize, getMinimumSize, getMousePosition, getPreferredSize, insets, invalidate, isAncestorOf, isFocusCycleRoot, isFocusCycleRoot, isFocusTraversalPolicyProvider, isFocusTraversalPolicySet, layout, list, list, locate, minimumSize, paint, paintComponents, preferredSize, print, printComponents, processContainerEvent, processEvent, remove, removeAll, removeContainerListener, removeNotify, setComponentZOrder, setFocusCycleRoot, setFocusTraversalKeys, setFocusTraversalPolicy, setFocusTraversalPolicyProvider, setFont, transferFocusDownCycle, validate, validateTree

Methods inherited from class java.awt.Component

action, add, addComponentListener, addFocusListener, addHierarchyBoundsListener, addHierarchyListener, addInputMethodListener, addKeyListener, addMouseListener, addMouseMotionListener, addMouseWheelListener, bounds, checkImage, checkImage, coalesceEvents, contains, contains, createImage, createImage, createVolatileImage, createVolatileImage, disable, disableEvents, dispatchEvent, enable, enable, enableEvents, enableInputMethods, firePropertyChange, firePropertyChange, firePropertyChange, firePropertyChange, firePropertyChange, firePropertyChange, firePropertyChange, firePropertyChange, firePropertyChange, getBackground, getBaseline, getBaselineResizeBehavior, getBounds, getBounds, getColorModel, getComponentListeners, getComponentOrientation, getCursor, getDropTarget, getFocusCycleRootAncestor, getFocusListeners, getFocusTraversalKeysEnabled, getFont, getFontMetrics, getForeground, getGraphicsConfiguration, getHeight, getHierarchyBoundsListeners, getHierarchyListeners, getIgnoreRepaint, getInputContext, getInputMethodListeners, getInputMethodRequests, getKeyListeners, getLocation, getLocation, getLocationOnScreen, getMouseListeners, getMouseMotionListeners, getMousePosition, getMouseWheelListeners, getName, getParent, getPeer, getPropertyChangeListeners, getPropertyChangeListeners, getSize, getSize, getToolkit, getTreeLock, getWidth, getX, getY, gotFocus, handleEvent, hasFocus, hide, imageUpdate, inside, isBackgroundSet, isCursorSet, isDisplayable, isDoubleBuffered, isEnabled, isFocusable, isFocusOwner, isFocusTraversable, isFontSet, isForegroundSet, isLightweight, isMaximumSizeSet, isMinimumSizeSet, isOpaque, isPreferredSizeSet, isShowing, isValid, isVisible, keyDown, keyUp, list, list, list, location, lostFocus, mouseDown, mouseDrag, mouseEnter, mouseExit, mouseMove, mouseUp, move, nextFocus, paintAll, postEvent, prepareImage, prepareImage, printAll, processComponentEvent, processFocusEvent, processHierarchyBoundsEvent, processHierarchyEvent, processInputMethodEvent, processKeyEvent, processMouseEvent, processMouseMotionEvent, processMouseWheelEvent, remove, removeComponentListener, removeFocusListener, removeHierarchyBoundsListener, removeHierarchyListener, removeInputMethodListener, removeKeyListener, removeMouseListener, removeMouseMotionListener, removeMouseWheelListener, removePropertyChangeListener, removePropertyChangeListener, repaint, repaint, repaint, requestFocus, requestFocus, requestFocusInWindow, requestFocusInWindow, reshape, revalidate, setBackground, setBounds, setBounds, setComponentOrientation, setCursor, setDropTarget, setEnabled, setFocusable, setFocusTraversalKeysEnabled, setForeground, setIgnoreRepaint, setLocale, setLocation, setLocation, setMaximumSize, setMinimumSize, setName, setPreferredSize, setSize, setSize, setVisible, show, show, size, toString, transferFocus, transferFocusBackward, transferFocusUpCycle

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, wait, wait, wait

Methods inherited from interface chemaxon.marvin.applet.JMSketchIface

mouseClicked, mouseEntered, mouseExited, mousePressed

Methods inherited from interface chemaxon.marvin.applet.MAppletIface

isChemicalTermsExpressionSyntaxError, setParentApplet, validateMoleculeStr, validateMoleculeStr

Constructor Detail

JMSketch

public JMSketch()

Method Detail

createGUI

protected void createGUI()

Specified by:

createGUI in class AbstractMarvinApplet

start

public void start()

Description copied from class: AbstractMarvinApplet

Starts the applet.

Overrides:

start in class AbstractMarvinApplet

getPanel

protected chemaxon.marvin.sketch.swing.SketchPanel getPanel()

Specified by:

getPanel in class AbstractMarvinApplet

getMolInPanel

protected chemaxon.struc.Molecule getMolInPanel()

getDocInPanel

protected chemaxon.struc.MDocument getDocInPanel()

isEmpty

public boolean isEmpty()

Specified by:

isEmpty in interface chemaxon.marvin.applet.JMSketchIface

Since:

Marvin 3.5.1

getSelectedMol

public String getSelectedMol(String fmt)

Specified by:

getSelectedMol in interface chemaxon.marvin.applet.JMSketchIface

Since:

Marvin 4.0.2

getMol

public String getMol(String fmt)

Specified by:

getMol in interface chemaxon.marvin.applet.JMSketchIface

getMolImage

public String getMolImage(String fmt)

Specified by:

getMolImage in interface chemaxon.marvin.applet.JMSketchIface

getMolFrags

public String[] getMolFrags(String fmt)

Specified by:

getMolFrags in interface chemaxon.marvin.applet.JMSketchIface

Since:

Marvin 5.10

getDisconnectedFragmentsCount

public int getDisconnectedFragmentsCount()

Specified by:

getDisconnectedFragmentsCount in interface chemaxon.marvin.applet.JMSketchIface

Since:

Marvin 5.10

getMolProperty

public String getMolProperty(String key)

Specified by:

getMolProperty in interface chemaxon.marvin.applet.JMSketchIface

Since:

Marvin 3.4.1

setMolProperty

public void setMolProperty(String key,
                  String value)

Specified by:

setMolProperty in interface chemaxon.marvin.applet.JMSketchIface

Since:

Marvin 3.4.1

getMolPropertyCount

public int getMolPropertyCount()

Specified by:

getMolPropertyCount in interface chemaxon.marvin.applet.JMSketchIface

Since:

Marvin 3.5

getMolPropertyKey

public String getMolPropertyKey(int i)

Specified by:

getMolPropertyKey in interface chemaxon.marvin.applet.JMSketchIface

Since:

Marvin 3.5

getAtomCount

public int getAtomCount()

Specified by:

getAtomCount in interface chemaxon.marvin.applet.JMSketchIface

Since:

Marvin 3.5.1

isAtomSelected

public boolean isAtomSelected(int i)

Specified by:

isAtomSelected in interface chemaxon.marvin.applet.JMSketchIface

Since:

Marvin 3.5.1

selectAllAtoms

public void selectAllAtoms(boolean v)

Specified by:

selectAllAtoms in interface chemaxon.marvin.applet.JMSketchIface

Since:

Marvin 5.0.3, 03/25/2008

selectAtom

public void selectAtom(int atom,
              boolean v)

Specified by:

selectAtom in interface chemaxon.marvin.applet.JMSketchIface

Since:

Marvin 5.0.3, 03/25/2008

setAtomAlias

public void setAtomAlias(int i,
                String alias)

Specified by:

setAtomAlias in interface chemaxon.marvin.applet.JMSketchIface

Since:

Marvin 3.5

getAtomAlias

public String getAtomAlias(int i)

Specified by:

getAtomAlias in interface chemaxon.marvin.applet.JMSketchIface

Since:

Marvin 3.5

setAtomExtraLabel

public void setAtomExtraLabel(int i,
                     String label)

Specified by:

setAtomExtraLabel in interface chemaxon.marvin.applet.JMSketchIface

Since:

Marvin 3.5

getAtomExtraLabel

public String getAtomExtraLabel(int i)

Specified by:

getAtomExtraLabel in interface chemaxon.marvin.applet.JMSketchIface

Since:

Marvin 3.5

getMolMass

public double getMolMass()

Specified by:

getMolMass in interface chemaxon.marvin.applet.JMSketchIface

Since:

Marvin 4.0.2

getMolExactMass

public double getMolExactMass()

Specified by:

getMolExactMass in interface chemaxon.marvin.applet.JMSketchIface

Since:

Marvin 4.0.2

getMolFormula

public String getMolFormula()

Specified by:

getMolFormula in interface chemaxon.marvin.applet.JMSketchIface

Since:

Marvin 4.0.2

evaluateChemicalTerms

public String evaluateChemicalTerms(String expression)

Specified by:

evaluateChemicalTerms in interface chemaxon.marvin.applet.JMSketchIface

Since:

Marvin 5.1

evaluateChemicalTerms0

protected String evaluateChemicalTerms0(String expression,
                            chemaxon.struc.Molecule mol)

Overrides:

evaluateChemicalTerms0 in class AbstractMarvinApplet

setMol

public void setMol(String s)

Specified by:

setMol in interface chemaxon.marvin.applet.JMSketchIface

setMol

public void setMol(String s,
          String opts)

Specified by:

setMol in interface chemaxon.marvin.applet.JMSketchIface

Since:

Marvin 3.3

getPiece

public String getPiece(String fmt)

Specified by:

getPiece in interface chemaxon.marvin.applet.JMSketchIface

Since:

Marvin 2.2

setPiece

public void setPiece(String s)

Specified by:

setPiece in interface chemaxon.marvin.applet.JMSketchIface

postImage

public void postImage(String fmt,
             String where)

Specified by:

postImage in interface chemaxon.marvin.applet.JMSketchIface

Since:

Marvin 2.9.12

undo

public void undo()

Specified by:

undo in interface chemaxon.marvin.applet.JMSketchIface

Since:

Marvin 4.1.2

redo

public void redo()

Specified by:

redo in interface chemaxon.marvin.applet.JMSketchIface

Since:

Marvin 4.1.2

clean2D

public void clean2D()

Specified by:

clean2D in interface chemaxon.marvin.applet.JMSketchIface

Since:

Marvin 5.3

clean3D

public void clean3D()

Specified by:

clean3D in interface chemaxon.marvin.applet.JMSketchIface

Since:

Marvin 5.3

getImageShowURL

public String getImageShowURL()

Specified by:

getImageShowURL in interface chemaxon.marvin.applet.JMSketchIface

setAutoScale

public void setAutoScale(boolean as)

Specified by:

setAutoScale in interface chemaxon.marvin.applet.JMSketchIface

Since:

Marvin 2.9.3

getAutoScale

public boolean getAutoScale()

Specified by:

getAutoScale in interface chemaxon.marvin.applet.JMSketchIface

Since:

Marvin 2.9.3

getScale

public double getScale()

Specified by:

getScale in interface chemaxon.marvin.applet.JMSketchIface

Since:

Marvin 2.2

setScale

public void setScale(double m)

Specified by:

setScale in interface chemaxon.marvin.applet.JMSketchIface

hasValenceError

public boolean hasValenceError()

Specified by:

hasValenceError in interface chemaxon.marvin.applet.JMSketchIface

Since:

Marvin 4.1.3 11/13/2006

mouseReleased

public void mouseReleased(MouseEvent ev)

Handles the viewer button press events.

Specified by:

mouseReleased in interface MouseListener

Overrides:

mouseReleased in class AbstractMarvinApplet

Parameters:

ev - the event object

getAtomSymbol

public String getAtomSymbol(int atomNum)

Gets the atom symbol of the specified atom, from the molecule currently used.

Specified by:

getAtomSymbol in interface chemaxon.marvin.applet.JMSketchIface

Parameters:

atomNum - the specified atom's number in the molecule

Returns:

atom symbol

getAtomValenceProperty

public int getAtomValenceProperty(int atomNum)

Gets the valence property of the specified atom, from the molecule currently used.

Specified by:

getAtomValenceProperty in interface chemaxon.marvin.applet.JMSketchIface

Parameters:

atomNum - the specified atom's number in the molecule

Returns:

valence property

setAtomValenceProperty

public void setAtomValenceProperty(int atomNum,
                          int value)

Sets the valence property of the specified atom, from the molecule currently used.

Specified by:

setAtomValenceProperty in interface chemaxon.marvin.applet.JMSketchIface

Parameters:

atomNum - the specified atom's number in the molecule

value - valence property value

getAtomCharge

public int getAtomCharge(int atomNum)

Gets the charge of the specified atom, from the molecule currently used.

Specified by:

getAtomCharge in interface chemaxon.marvin.applet.JMSketchIface

Parameters:

atomNum - the specified atom's number in the molecule

Returns:

the charge

setAtomCharge

public void setAtomCharge(int atomNum,
                 int chg)

Sets the charge of the specified atom, from the molecule currently used.

Specified by:

setAtomCharge in interface chemaxon.marvin.applet.JMSketchIface

Parameters:

atomNum - the specified atom's number in the molecule

chg - the charge

getAtomRadicalState

public int getAtomRadicalState(int atomNum)

Gets the radical state of the specified atom, from the molecule currently used.

Specified by:

getAtomRadicalState in interface chemaxon.marvin.applet.JMSketchIface

Parameters:

atomNum - the specified atom's number in the molecule

Returns:

radical state

setAtomRadicalState

public void setAtomRadicalState(int atomNum,
                       int radState)

Sets the radical state of the specified atom, from the molecule currently used.

Specified by:

setAtomRadicalState in interface chemaxon.marvin.applet.JMSketchIface

Parameters:

atomNum - the specified atom's number in the molecule

radState - radical state

setAbsoluteStereoFlag

public void setAbsoluteStereoFlag(boolean stereoFlag)

Specified by:

setAbsoluteStereoFlag in interface chemaxon.marvin.applet.JMSketchIface

setAbsoluteStereoFlag0

public void setAbsoluteStereoFlag0(Boolean stereoFlag)